ExScaliburGMD germline mutation detection
Download
The source code is available on GitHub (ExScaliburGMD). Download the project as follows (you need to install Git first):
# Clone repository $ git clone git@github.com:cribioinfo/ExScaliburGMD.git
Install
# Uncompress the pipelines $ tar zxvf bds-exscaliburgmd.tar.gz
ExScaliburSMD somatic mutation detection
Download
The source code is available on GitHub (ExScaliburSMD). Download the project as follows (you need to install Git first):
# Clone repository $ git clone git@github.com:cribioinfo/ExScaliburSMD.git
Install
# Uncompress the pipelines $ tar zxvf bds-exscalibursmd.tar.gz
ExScalibur-Viz dynamic data analysis report
Download
The source code is available on GitHub (ExScaliburViz). Download the project as follows (you need to install Git first):
# Clone repository $ git clone git@github.com:cribioinfo/ExScaliburViz.git
Install
# Uncompress the pipelines $ tar zxvf exscaliburviz.tar.gz
Requirements
ExScalibur pipelines and visualization utility require the following software:
- BigDataScript (0.999g or above)
- Perl (5.0 or above)
- Python (2.7 or above)
- R (3.0 or above)
License
ExScalibur is open source under LGPLv3.0.
More
GMD pipeline documentation
GMD pipeline documentation
ExScaliBur Viz documentation