To obtain ExScalibur source code, please go to Source.
To access ExScalibur on AWS EC2, please go to Cloud.
Version 0.5.0 2015-03-31
Platform
- Illumina single-end or paired-end sequencing
Genomes
- Homo sapiens (hg19)
Aligners
- BWA aln
- BWA mem
- Novoalign
Germline variant callers
- GATK HaplotypeCaller
- GATK UnifiiedGenotyper
- FreeBayes
- SAMtools mpileup/bcftools
- Issac Variant Caller (IVC)
- Platypus
Somatic variant callers
- MuTect
- Shimmer
- SomaciSniper
- Strelka
- VarScan2
- Vimid