AWS EC2 Access
ExScalibur is available on Amazon Web Services (AWS) EC2 (ami-bc567ed4).
Pre-installed Tools and Package
root@master:~# module av ---------------------------------------------------------- /modules/ ----------------------------------------------------------- bcftools/0.1.19 gatk/3.1.1 java/1.7.0 picard/1.129 somatic-sniper/1.0.4 vcfsorter bedtools/2.21.0 gvcftools/0.16 java/1.8.0 platypus/0.8.1 strelka/1.0.14 vcftools/0.1.12a bwa/0.7.10 htslib/1.2.1 mutect/1.1.7 samtools/0.1.19 tabix/0.2.6 vcfutils/0.1.19 fastqc/0.11.2 igvtools/2.3.32 novocraft/3.02.08 SeqPrep/b5efabc5f7 varscan/2.3.6 virmid/1.1.1 freebayes/0.9.13 ivc/1.0.6 picard/1.123 shimmer/b62f433 vcflib vt